Package: tidygenomics 0.1.2

tidygenomics: Tidy Verbs for Dealing with Genomic Data Frames

Handle genomic data within data frames just as you would with 'GRanges'. This packages provides method to deal with genomic intervals the "tidy-way" which makes it simpler to integrate in the the general data munging process. The API is inspired by the popular 'bedtools' and the genome_join() method from the 'fuzzyjoin' package.

Authors:Constantin Ahlmann-Eltze [aut, cre], Stan Developers [cph], David Robinson [cph]

tidygenomics_0.1.2.tar.gz
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tidygenomics.pdf |tidygenomics.html
tidygenomics/json (API)
NEWS

# Install 'tidygenomics' in R:
install.packages('tidygenomics', repos = c('https://const-ae.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/const-ae/tidygenomics/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

genomicsintervalstidy

12 exports 102 stars 4.22 score 30 dependencies 1 mentions 27 scripts 155 downloads

Last updated 3 years agofrom:23737e99f7. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 09 2024
R-4.5-win-x86_64OKSep 09 2024
R-4.5-linux-x86_64OKSep 09 2024
R-4.4-win-x86_64OKSep 09 2024
R-4.4-mac-x86_64OKSep 09 2024
R-4.4-mac-aarch64OKSep 09 2024
R-4.3-win-x86_64OKSep 09 2024
R-4.3-mac-x86_64OKSep 09 2024
R-4.3-mac-aarch64OKSep 09 2024

Exports:cluster_intervalgenome_anti_join_closestgenome_clustergenome_complementgenome_full_join_closestgenome_inner_join_closestgenome_intersectgenome_join_closestgenome_left_join_closestgenome_right_join_closestgenome_semi_join_closestgenome_subtract

Dependencies:BiocGenericsclicpp11dplyrfansifuzzyjoingenericsgeosphereglueIRangeslatticelifecyclemagrittrpillarpkgconfigpurrrR6RcpprlangS4Vectorsspstringdiststringistringrtibbletidyrtidyselectutf8vctrswithr

Tidy Genomics

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Last update: 2019-05-23
Started: 2017-05-06