Package: ggupset 0.4.0.9000

ggupset: Combination Matrix Axis for 'ggplot2' to Create 'UpSet' Plots

Replace the standard x-axis in 'ggplots' with a combination matrix to visualize complex set overlaps. 'UpSet' has introduced a new way to visualize the overlap of sets as an alternative to Venn diagrams. This package provides a simple way to produce such plots using 'ggplot2'. In addition it can convert any categorical axis into a combination matrix axis.

Authors:Constantin Ahlmann-Eltze [aut, cre]

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ggupset/json (API)
NEWS

# Install 'ggupset' in R:

install.packages('ggupset', repos = c('https://const-ae.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/const-ae/ggupset/issues

Datasets:

df_complex_conditions - A fictional biological dataset with a complex experimental design
gene_pathway_membership - A fictional dataset describing which genes belong to certain pathways
tidy_movies - Tidy version of the movies dataset from the ggplot2 package

On CRAN:

ggplot ggplot-extension upset

4 exports 330 stars 6.60 score 28 dependencies 7 dependents 2 mentions 430 scripts 4.0k downloads

Last updated 3 months agofrom:a564ed50f2. Checks:OK: 5 ERROR: 2. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Aug 24 2024
R-4.5-win	OK	Aug 24 2024
R-4.5-linux	OK	Aug 24 2024
R-4.4-win	OK	Aug 24 2024
R-4.4-mac	ERROR	Aug 24 2024
R-4.3-win	OK	Aug 24 2024
R-4.3-mac	ERROR	Aug 24 2024

Exports:axis_combmatrix scale_x_mergelist scale_x_upset theme_combmatrix

Dependencies:cli colorspace fansi farver ggplot2 glue gtable isoband labeling lattice lifecycle magrittr MASS Matrix mgcv munsell nlme pillar pkgconfig R6 RColorBrewer rlang scales tibble utf8 vctrs viridisLite withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Convert delimited text labels into a combination matrix axis	axis_combmatrix
A fictional biological dataset with a complex experimental design	df_complex_conditions
A fictional dataset describing which genes belong to certain pathways	gene_pathway_membership
Merge list columns into character vectors	scale_x_mergelist
Scale to make UpSet plots	scale_x_upset
Theme for the combination matrix	theme_combmatrix
Tidy version of the movies dataset from the ggplot2 package	tidy_movies